{ "_id": "6ace076ca14063b82c3aead9", "Package": "JointFPM", "Type": "Package", "Title": "A Parametric Model for Estimating the Mean Number of Events", "Authors@R": "c(person(given = \"Joshua P.\",\nfamily = \"Entrop\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"joshuaentrop@posteo.de\",\ncomment = c(ORCID = \"0000-0003-1614-8096\")),\nperson(given = \"Alessandro\",\nfamily = \"Gasparini\",\nrole = \"ctb\"),\nperson(given = \"Mark\",\nfamily = \"Clements\",\nrole = \"ctb\"))", "Version": "1.3.0.9000", "Date": "2025-07-26", "Description": "Implementation of a parametric joint model for modelling\nrecurrent and competing event processes using generalised\nsurvival models as described in Entrop et al., (2025)\n. The joint model can subsequently be\nused to predict the mean number of events in the presence of\ncompeting risks at different time points. Comparisons of the\nmean number of event functions, e.g. the differences in mean\nnumber of events between two exposure groups, are also\navailable.", "URL": "https://github.com/entjos/JointFPM,\nhttps://entjos.github.io/JointFPM/", "BugReports": "https://github.com/entjos/JointFPM/issues", "License": "CC BY 4.0", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "watcher, Parallel*", "LazyData": "true", "Repository": "https://entjos.r-universe.dev", "Date/Publication": "2025-11-16 14:54:36 UTC", "RemoteUrl": "https://github.com/entjos/jointfpm", "RemoteRef": "HEAD", "RemoteSha": "7c417c5a7d15a5be635009cfb093198112ac1978", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-13 10:21:54 UTC", "User": "root" }, "Author": "Joshua P. Entrop [aut, cre, cph] (ORCID:\n),\nAlessandro Gasparini [ctb],\nMark Clements [ctb]", "Maintainer": "Joshua P. Entrop ", "_user": "entjos", "_type": "src", "_file": "JointFPM_1.3.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/9acf4547b81310bbba36c896d6f797f5d094fb74769b87ae0c427b9476279d5d", "_filesize": 141595, "_sha256": "9acf4547b81310bbba36c896d6f797f5d094fb74769b87ae0c427b9476279d5d", "_expires": "2027-01-21T10:26:50.000Z", "_created": "2026-10-13T10:21:54.000Z", "_published": "2026-10-13T10:26:52.628Z", "_buildurl": "https://github.com/r-universe/entjos/actions/runs/38382550664", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 115247411709, "time": 156, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11804666356" }, { "job": 115247411444, "time": 153, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11803524028" }, { "job": 115247411576, "time": 253, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11803753375" }, { "job": 115247411542, "time": 219, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11804417676" }, { "job": 115246428927, "time": 151, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11804685952" }, { "job": 115247411451, "time": 99, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11803653411" }, { "job": 115247412467, "time": 126, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11803948301" }, { "job": 115247411607, "time": 124, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11804631905" }, { "job": 115247411586, "time": 133, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11803649244" } ], "_upstream": "https://github.com/entjos/jointfpm", "_commit": { "id": "7c417c5a7d15a5be635009cfb093198112ac1978", "author": "entjos ", "committer": "entjos ", "message": "Set tolerance for mean number of events test\n", "time": 1763304876 }, "_maintainer": { "name": "Joshua P. Entrop", "email": "joshuaentrop@posteo.de", "login": "entjos", "linkedin": "in/joshua-entrop", "orcid": "0000-0003-1614-8096", "description": "I am a biostatistician at Red Door Analytics AB, who mostly works with survival analysis & cancer epidemiology.", "uuid": 33284526 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "rstpm2", "version": ">= 1.5.2", "role": "Imports" }, { "package": "survival", "version": ">= 3.2-13", "role": "Imports" }, { "package": "data.table", "version": ">= 1.14.2", "role": "Imports" }, { "package": "rlang", "version": ">= 1.1.0", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "rmutil", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "matrixStats", "role": "Imports" }, { "package": "statmod", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "entjos", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-46", "n": 5 } ], "_tags": [], "_topics": [ "recurrent-events", "survival-analysis" ], "_stars": 7, "_contributors": [ { "user": "entjos", "count": 148, "uuid": 33284526 }, { "user": "ellessenne", "count": 6, "uuid": 10330005 }, { "user": "mclements", "count": 1, "uuid": 557321 } ], "_userbio": { "uuid": 33284526, "type": "user", "name": "Joshua Philipp Entrop", "followers": 22, "description": "I am a biostatistician at Red Door Analytics AB, who mostly works with survival analysis & cancer epidemiology." }, "_downloads": { "count": 388, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/JointFPM" }, "_devurl": "https://github.com/entjos/jointfpm", "_pkgdown": "https://entjos.github.io/JointFPM/", "_searchresults": 11, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/JointFPM.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/entjos/jointfpm", "_realowner": "entjos", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2023-09-23" }, { "version": "1.0.1", "date": "2023-10-13" }, { "version": "1.1.0", "date": "2023-11-27" }, { "version": "1.2.0", "date": "2024-01-22" }, { "version": "1.2.1", "date": "2024-06-19" }, { "version": "1.2.2", "date": "2025-02-20" }, { "version": "1.3.0", "date": "2025-08-01" } ], "_exports": [ "JointFPM", "mean_no", "test_dfs_JointFPM" ], "_datasets": [ { "name": "bladder1_stacked", "title": "Stacked version of the bladder1 dataset included in the survival package", "object": "bladder1_stacked", "class": [ "data.table", "data.frame" ], "fields": [ "id", "treatment", "size", "start", "stop", "status", "ce", "re", "event", "pyridoxine", "thiotepa" ], "rows": 412, "table": true, "tojson": true } ], "_help": [ { "page": "bladder1_stacked", "title": "Stacked version of the bladder1 dataset included in the survival package", "topics": [ "bladder1_stacked" ] }, { "page": "JointFPM", "title": "Joint FPMs for recurrent and competing events.", "topics": [ "JointFPM" ] }, { "page": "mean_no", "title": "Non-parametric estimation of mean number of events", "topics": [ "mean_no" ] }, { "page": "predict.JointFPM", "title": "Post-estimation function for JointFPMs", "topics": [ "predict.JointFPM" ] }, { "page": "summary.JointFPM", "title": "Summarises a 'JointFPM' objects", "topics": [ "summary.JointFPM" ] }, { "page": "test_dfs_JointFPM", "title": "Tests DFs for JointFPMs.", "topics": [ "test_dfs_JointFPM" ] } ], "_readme": "https://github.com/entjos/jointfpm/raw/HEAD/README.md", "_rundeps": [ "bbmle", "bdsmatrix", "cli", "data.table", "fastGHQuad", "lattice", "lifecycle", "lsoda", "MASS", "Matrix", "matrixStats", "mgcv", "mvtnorm", "nlme", "numDeriv", "Rcpp", "RcppArmadillo", "rlang", "rmutil", "rstpm2", "statmod", "survival" ], "_score": 3.886490725172482, "_indexed": true, "_nocasepkg": "jointfpm", "_universes": [ "entjos" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.3.0.9000", "date": "2026-10-13T10:23:45.000Z", "distro": "resolute", "commit": "7c417c5a7d15a5be635009cfb093198112ac1978", "fileid": "https://r2.ropensci.org/1b51a458024ffc3b3a2a18205e6ff330bd7a4b3007535b4c7296fdb3f18eff55", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/entjos/actions/runs/38382550664" }, { "r": "4.6.1", "os": "linux", "version": "1.3.0.9000", "date": "2026-10-13T10:23:39.000Z", "distro": "resolute", "commit": "7c417c5a7d15a5be635009cfb093198112ac1978", "fileid": "https://r2.ropensci.org/d10846b47c51f4c6ab2fa08d01e6cd47d4af1d2cbca3ebe30f339a7ef22b754c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/entjos/actions/runs/38382550664" }, { "r": "4.5.3", "os": "mac", "version": "1.3.0.9000", "date": "2026-10-13T10:24:44.000Z", "commit": "7c417c5a7d15a5be635009cfb093198112ac1978", "fileid": "https://r2.ropensci.org/5d62b6801f6cc1f397a2a35628dcfd93a48df56b0f9321a6ba43ee287f62a434", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/entjos/actions/runs/38382550664" }, { "r": "4.6.1", "os": "mac", "version": "1.3.0.9000", "date": "2026-10-13T10:24:33.000Z", "commit": "7c417c5a7d15a5be635009cfb093198112ac1978", "fileid": "https://r2.ropensci.org/ecf15b9ad13d6f67d5789f36e5599950931b8d595cad1e30812173fec6ccd1af", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/entjos/actions/runs/38382550664" }, { "r": "4.6.0", "os": "wasm", "version": "1.3.0.9000", "date": "2026-10-13T10:23:49.000Z", "commit": "7c417c5a7d15a5be635009cfb093198112ac1978", "fileid": "https://r2.ropensci.org/610de5be0b4109b12a289c8c6651f6cc1f34121ea24dbfd92a30311213858971", "status": "success", "buildurl": "https://github.com/r-universe/entjos/actions/runs/38382550664" }, { "r": "4.7.0", "os": "win", "version": "1.3.0.9000", "date": "2026-10-13T10:23:02.000Z", "commit": "7c417c5a7d15a5be635009cfb093198112ac1978", "fileid": "https://r2.ropensci.org/aa9c99383d5a83a576b2d95bf70249a8797cea2d8611694d1423b2205824876c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/entjos/actions/runs/38382550664" }, { "r": "4.5.3", "os": "win", "version": "1.3.0.9000", "date": "2026-10-13T10:23:02.000Z", "commit": "7c417c5a7d15a5be635009cfb093198112ac1978", "fileid": "https://r2.ropensci.org/eaa77373d9616c024fde17daac969266871944379432edd287fda5467ea1ad8e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/entjos/actions/runs/38382550664" }, { "r": "4.6.1", "os": "win", "version": "1.3.0.9000", "date": "2026-10-13T10:23:10.000Z", "commit": "7c417c5a7d15a5be635009cfb093198112ac1978", "fileid": "https://r2.ropensci.org/5ab2ee22df5fe0bb926bbbfda223e6db3b85b5cf732aba02095d4561d6cbc51c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/entjos/actions/runs/38382550664" } ] }